WorkPackage 1: Data Management
and Integration

- Objectives - Deliverables - Special Issue ESSDJ responsibilities -

Leader: Stephane Pesant (spesant(at)marum.de; University of Bremen)
Contributors: DTU-Aqua; NOCS; MRI-HAFRO; IMR; SAHFOS; CNRS; CLS; UPMC

access to project data: Pangaea Portal

Objectives:

The primary objective is to develop methods to consolidate and integrate long-term observations from European and international databases. EURO-BASIN will use these methods to assemble historical data, new field observations and experimental results into comprehensive datasets for modelling and prediction of the Atlantic Ocean ecosystem and related services.

WP1 Deliverables:

D1.1) Report and delivery of consolidated historical data by Task1.3.1: [May 2012; Resp: A. Martin]

D1.2
) Report and delivery of consolidated historical data by T1.3.2: [May 2012; Resp.: P. Licandro]

D1.3
) Report and delivery of consolidated historical data by T1.3.3: [May 2012; Resp.: Torkel Nielsen]

D1.4
) Report and delivery of rescued historical data by T1.3.4: [May 2012; Resp.: Hernandez]

D1.5
) Report and delivery of rescued historical data by T1.3.5: [May 2012; Resp.: A. Gislasson]

D1.6
) Report and delivery of rescued historical data by T1.3.6: [May 2012; Resp.: N. Holdsworth]

D1.7
) Report and delivery of consolidated historical data by T1.3.7: [May 2012; Resp.: P. Lehodey]

D1.8
) Report and delivery of consolidated historical data by T1.3.8: [Submitted June 2012]
D1.9) First Data Management & Integration report, coordinated by T1.1: [Submitted May 2012]

D1.10
) Submission of data manuscripts to ESSD by T1.1 : First EURO-BASIN special issue:
[Oct 2012; Manusripts in review Mar-Aug 2013]

D1.11
) Second year Data Management & Integration report, coordinated by T1.1:
[Submitted Feb 2014]

D1.12
) Submission of data manuscripts to ESSD by T1.1: Second EURO-BASIN special issue: [Submitted Oct 2014]

D1.13
) Final Data Management & Integration report, coordinated by T1.1:
[Submitted Oct 2014]

Data Management Responsibilities
Download as ppt

 

Special Issue in Earth System Science Data Journal

EURO-BASIN Data integration for basin-scale analysis of living resources in the North Atlantic
Submission deadline: 1st March-1 Oct 2013; for contributors responsibilities contact Janine Felden

Content:

Introduction to the special issue:
Lead author: Stéphane Pesant

1. Title: Export Production Fluxes in the Atlantic Ocean
Lead authors: Sinhué Torres‐Valdés and Adrian Martin
Data sources: EURO‐BASIN WP2: Task 1.3.1 (Deliverable 1.1)

2. Title: Biogeochemical fluxes through mesozooplankton
Lead authors: Erik Buitenhuis, Andrew Hirst, Claudia Castellani
Data sources: Data supplement from EURO‐BASIN WP4 Review paper in Progress in Oceanography;
Data supplement from Buitenhuis, E.T., C. Le Quéré, O. Aumont, G. Beaugrand, A. Bunker, A. Hirst, T.
Ikeda, T. O'Brien, S. Piontkovski, D. Straile, 2006. Biogeochemical fluxes through mesozooplankton.
Global Biogeochemical Cycles, 20, GB2003

3. Title: Biogeochemical fluxes through microzooplankton
Lead authors: Sevrine Sailley, Richard Rivkin, Erik Buitenhuis
Data sources: Sevrine's Thesis (i.e. literature compilations about dinoflagellate and ciliate rates
measured in the lab); Richard Rivkin field measurements compilation; Data supplement
from Buitenhuis, E.T., R. Rivkin, S. Sailley, C. Le Quéré (2010) Biogeochemical fluxes through
microzooplankton. Global Biogeochemical Cycles, 24, GB4015, doi:10.1029/2009GB003601

4. Title: Biogeography of jellyfish in the North Atlantic, by traditional and genomic methods
Lead authors: Priscilla Licandro
Data sources: EURO‐BASIN WP3: T1.3.2 (Deliverable 1.2); The manuscript will also introduce the cnidarian genetic library that SAHFOS is putting together.

5. Title: Biogeography of key mesozooplankton species in the North Atlantic, by manual counting methods
Lead authors: Webjørn Melle
Data sources: EURO‐BASIN WP3: T1.3.3‐T1.3.4 (Deliverables 1.3D1.4); The review paper in Progress in Oceanography includes data from EU, Canadian and USA historical cruises (1971‐2010), time series stations and EuroBASIN cruises.

6. Title: Biogeography of key mesozooplankton species in the North Atlantic, by semi‐automated
optical methods

Lead authors: Lars Stemmann & Astthor Gislason
Data sources: EURO‐BASIN WP3: T1.3.5 (Deliverable 1.5); Data from other labs in EU, Canada and USA that are equipped with ZooScans and analysed samples from the North Atlantic Ocean with semi‐automatic optical methods

7. Title: Spatially explicit estimates of stocks sizes, structure and biomass of Herring, blue Whiting
and Mackerel

Lead authors: Geir Huse
Data sources: EURO‐BASIN WP5: T1.3.6 & T1.3.8 (Deliverables 1.6 & D1.8); This compilation includes data from acoustics and trawl surveys

8. TTLE: Spatially explicit estimates of stocks sizes, structure and biomass of Tuna
Lead authors: Patrick Lehodey, Haritz Arrizabalaga
Data sources: EURO‐BASIN WP5: T1.3.7 (Deliverable 1.7)

9. Stomach contents of Herring, blue Whiting, Mackerel and Tuna in the North Atlantic
Lead authors: John Pinnegar
Based on, John K Pinnegar & Mark Platts

9. Title: Stomach contents of Herring, blue Whiting, Mackerel and Tuna in the North Atlantic
Lead authors: John Pinnegar, Nicolas Goni, Haritz Arrizabalaga
Data sources: Data from IMR, AZTI, Ifremer and "DAPSTOM - An Integrated Database & Portal for Fish Stomach Records Version 3.6"

Additional manuscript in discussion:
10. Title: Phytoplankton production in the ocean: Accounts of extracellular release of fixed carbon in the 14C technique
Lead authors: Louis Legendre, Stéphane Pesant, Jean‐Pierre Gattuso, Dave Karl
Data sources: EUR‐OCEANS literature review

 

 

WP1 Data Management
is represented on the Steering Committee by:

Stephane Pesant Stephane Pesant
MARUM, Un. Bremen

spesant(a)marum.de

+49 421 218-65583

 


EURO-BASIN Data Curator:

Stephane Pesant

 

Janine Felden

jfelden(a)marum.de

Research WorkPackages (WP) & Focus:

WP Focus Leader
WP1 Data Integration Un. Bremen
WP2 Carbon Pump NOC;CNRS-UBO
WP3 Key Species IMR;Un. Nordland
WP4 Trophic Flow HAFRO;Un.Swansea
WP5 Living Resources IFREMER; DTU
WP6 Basin-scale Modelling PML;CNRS-UBO
WP7 Bioeconomic Modelling PML;UEA;IRD
WP8 Ocean Management DTU;Un. Hamburg

EURO-BASIN Deliverable Deadlines



Add "EURO-BASIN Deliverables Deadlines" to your calendar software:

iCal Thunderbird Calendar MS Outlook